BtaEX6093100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4242263-4423341:+
Coord C1 exon
chr22:4242263-4242354
Coord A exon
chr22:4399992-4400149
Coord C2 exon
chr22:4423262-4423341
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTTTTTTCCCTTAGCAA
3' ss Score
8.87
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTATGGTTTTGTAGATTTCGACAGCCCAGCAGCTGCACAGAAAGCAGTAGCATCTCTCAAGGCAAATGGCGTGCAGGCACAGATGGCCAAG
Seq A exon
CAACAAGAGCAAGACCCAACAAACCTTTACATCTCAAATCTCCCCATTTCTATGGACGAGCAGGAACTTGAGAATATGCTGAAACCCTTTGGACATGTCATTTCCACAAGGATACTAAGAGATGCTAATGGAGTCAGCAGAGGCGTTGGCTTTGCCAG
Seq C2 exon
AATGGAGTCTACTGAAAAATGTGAAGTGGTAATTCAACATTTTAATGGAAAATATCTGAAAACACCACCAGGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062-'4-7,'4-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.302 C2=0.071
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
ENSBTAT00000061510fB5824
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGTTTTGTAGATTTCGACAGCC
R:
CTGGGATTCCTGGTGGTGTTT
Band lengths:
171-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]