HsaEX0052785 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29587114-29762989:+
Coord C1 exon
chr3:29587114-29587205
Coord A exon
chr3:29739720-29739877
Coord C2 exon
chr3:29762910-29762989
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTACTTTCCTTCCCTTAGCAA
3' ss Score
8.23
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTATGGTTTTGTAGATTTTGACAGTCCTGCAGCCGCACAGAAAGCGGTAGCATCTCTCAAGGCAAATGGCGTGCAGGCACAGATGGCTAAG
Seq A exon
CAACAAGAGCAAGACCCAACAAACCTATACATCTCAAATCTCCCCATTTCTATGGATGAGCAGGAGCTTGAGAATATGCTGAAACCCTTTGGACATGTCATTTCCACAAGAATACTAAGAGACGCTAATGGAGTCAGCAGAGGTGTTGGCTTTGCCAG
Seq C2 exon
AATGGAGTCTACTGAAAAATGTGAAGTGGTAATTCAACATTTTAATGGAAAATATCTGAAAACACCACCAGGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.311 C2=0.083
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
ENST00000636680fB24294
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTTTTGTAGATTTTGACAGTCC
R:
CTGGGATGCCTGGTGGTGTTT
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development