DreEX6042219 @ danRer10
Exon Skipping
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39792427-39880008:-
Coord C1 exon
chr16:39879917-39880008
Coord A exon
chr16:39795131-39795288
Coord C2 exon
chr16:39792427-39792506
Length
158 bp
Sequences
Splice sites
3' ss Seq
ACTGTGTGTTCTCTCTACAGCAA
3' ss Score
11.62
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GATATGGCTTTGTGGATTTCGACAGTCCGGCAGCGGCGCAGAAAGCTGTAGCGTCCCTGAAGGCCAGCGGCGTGCAGGCACAGATGGCAAAG
Seq A exon
CAACAAGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCGATGGATGAACAAGAGTTGGAGAACATGCTGAAGCCTTTCGGACATGTCATCTCCACACGGATACTCCGAGATGCCAACGGGGTCAGCCGAGGGGTCGGTTTTGCCAG
Seq C2 exon
AATGGAGTCCACTGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTTCTCAAAACCCCACCAGGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574-'7-14,'7-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.344 C2=0.137
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=FE(28.0=100),PF0007617=RRM_1=PD(39.7=87.1)
A:
PF062597=Abhydrolase_8=PD(13.1=26.4),PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCTTTGTGGATTTCGACAGT
R:
CTGGAACTCCTGGTGGGG
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]