RnoEX0074763 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:125070885-125237454:-
Coord C1 exon
chr8:125237363-125237454
Coord A exon
chr8:125086581-125086738
Coord C2 exon
chr8:125070885-125070964
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTCCTTCCCCTAGCAA
3' ss Score
9.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTATGGTTTTGTAGATTTTGATAGTCCGGCAGCCGCACAGAAAGCAGTGGCATCCTTGAAGGCAAATGGTGTGCAAGCACAGATGGCCAAG
Seq A exon
CAACAAGAGCAAGACCCTACGAACCTATACATCTCAAACCTCCCCATCTCCATGGATGAGCAGGAGCTGGAGAATATGCTAAAGCCCTTTGGACACGTGATATCCACCAGAATCCTGAGAGATGCCAACGGCGTCAGCAGAGGCGTAGGCTTTGCCAG
Seq C2 exon
AATGGAGTCTACTGAAAAATGTGAAGTGGTAATTCAACATTTTAATGGAAAATATCTGAAAACACCGCCAGGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-'15-18,'15-16,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.310 C2=0.077
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGTAGATTTTGATAGTCCGGC
R:
GATGCCTGGCGGTGTTTTCAG
Band lengths:
163-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]