BtaEX6022459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003183 | NTN4
Description
Bos taurus netrin 4 (NTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001102203]
Coordinates
chr5:60425388-60453088:-
Coord C1 exon
chr5:60452810-60453088
Coord A exon
chr5:60428488-60428614
Coord C2 exon
chr5:60425388-60425576
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTCTTACTTTTCTTTGCAGGTC
3' ss Score
10.98
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTTATTTTCAGAGCTTTGTCACCACCGAATGATATGGAGAACCCTTACGGTGCCAAGGTGCAGGAGCAGCTGAAGATCACCAACCTCCGTGTGCAGCTGCTAAAACGACAGTCTTGTCCCTGTCAGAGAAACCACTTGAATGCAGAGCCTCAACATTTTACCCACTATGCAATCTATGATTTCATTGTTAAGGGCAGCTGCTTCTGTAACGGCCATGCTGACCAGTGCATACCTATTGATGGCTTCAGACCTGTCAAGGCCCCTGGAGCATTCCACGTG
Seq A exon
GTCCATGGAAAGTGTATATGTAAGCACAACACAGCAGGCACCCACTGCCAACACTGTGCACCTTTATATAACGACCGCCCCTGGGAGGCAGCTGATGGAAAAACAGGGTCTCCAAATGAGTGCAGAA
Seq C2 exon
CCTGCAAGTGCAATGGACATGCTGACGCCTGTCACTTTGACATTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGCGGCGTCTGCAATGACTGTCAGCACAACACAGAAGGTCAACACTGCCAGCGATGTAAGCCAGGCTTCTACTGGGACCTCCGAAGACCTTTCTCTGCCCCAGATGCTTGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003183-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
A:
PF0005319=Laminin_EGF=PD(58.8=93.0)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
ENSBTAT00000004136fB4826
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAGCTGAAGATCACCA
R:
CAGCATGTCCATTGCACTTGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]