GgaEX1040605 @ galGal3
Exon Skipping
Gene
ENSGALG00000011406 | NTN4
Description
NA
Coordinates
chr1:47508659-47519507:-
Coord C1 exon
chr1:47519235-47519507
Coord A exon
chr1:47509039-47509165
Coord C2 exon
chr1:47508659-47508847
Length
127 bp
Sequences
Splice sites
3' ss Seq
CACTCTCTTTTCCCCACCAGGTC
3' ss Score
10.98
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTGATATACCGAGCCCTCTCGCCGCCGCATGCCGCCAAGGACCCATACAGCACAGAGGCCCAGGCACAGCTGAAGGTGACCAACCTCCGTGTGCGGCTGCTGGAGCGGCAGAGCTGCCCCTGCCACCCGCTGGAACCGCCGGCCCTGCCAGCCCCATACTACGCCGTCTACGACTTCATTGTGAAGGGCAGCTGCTTCTGCAATGGCCACGCCGACCACTGTGTCCCCGTCAGAGGGTTCCGGCCTGTCAGGGCAGCCGGTGCTTTCCATGTG
Seq A exon
GTCCATGGGAAGTGCATGTGCAAACACAACACTGCAGGACCTCACTGCCAGCACTGTGCCCCGCTCTACAATGACCGCCCTTGGCAGGCTGCTGATGGCAAAACTGGAGCCCCCCGAGAGTGTCAGT
Seq C2 exon
CGTGCAAGTGTAATGGGCATGCCGACACCTGTCACTTTGACATGGATGCGTGGCTGGCATCAGGCAACCGCAGTGGTGGTGTCTGCGACAACTGTCAGCACAACACAGAGGGGCAGCACTGCCAACGCTGCAAGCCAGGCTTCTACCGAGACCTGCGAAAGCCCTTCTCTGCCCCAGATGCTTGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011406-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(27.6=68.1),PF0005319=Laminin_EGF=PU(38.2=28.6)
A:
PF0005319=Laminin_EGF=PD(58.8=93.0)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCATACAGCACAGAGG
R:
GCATGCCCATTACACTTGCAC
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]