HsaEX0044065 @ hg19
Exon Skipping
Gene
ENSG00000074527 | NTN4
Description
netrin 4 [Source:HGNC Symbol;Acc:13658]
Coordinates
chr12:96104219-96131922:-
Coord C1 exon
chr12:96131644-96131922
Coord A exon
chr12:96106990-96107116
Coord C2 exon
chr12:96104219-96104407
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCACTTGATGTTGCTTGTAGGTC
3' ss Score
7.72
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTTATTTTCAAAGCTTTGTCACCACCATACGATACAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCTTCGCGTGCAGCTGCTGAAACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACATTTTACACACTATGCAATCTATGATTTCATTGTCAAGGGCAGCTGCTTCTGCAATGGCCACGCTGATCAATGCATACCTGTTCATGGCTTCAGACCTGTCAAGGCCCCAGGAACATTCCACATG
Seq A exon
GTCCATGGGAAGTGTATGTGTAAGCACAACACAGCAGGCAGCCACTGCCAGCACTGTGCCCCGTTATACAATGACCGGCCATGGGAGGCAGCTGATGGCAAAACGGGGGCTCCCAACGAGTGCAGAA
Seq C2 exon
CCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGGTGTCTGTGATGACTGTCAGCACAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074527_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(28.7=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
A:
PF0005319=Laminin_EGF=PD(58.8=93.0)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATCACCAACCTTCGCGT
R:
GTGACAGGTATCAGCATGCCC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)