DreEX6004390 @ danRer10
Exon Skipping
Gene
ENSDARG00000102066 | ntn4
Description
netrin 4 [Source:ZFIN;Acc:ZDB-GENE-050310-1]
Coordinates
chr7:19096108-19107338:-
Coord C1 exon
chr7:19107075-19107338
Coord A exon
chr7:19098480-19098606
Coord C2 exon
chr7:19096108-19096293
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTGGCCTCTGCAGGTG
3' ss Score
11.19
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGATTTACCGTGCACTGTCACCTTATGAGAGGCTGGATCCATACAGCACTGATGCCCGCTCACTGCTGGGCGTCACTAATGTCAGGATTCGTCTGCTTCAGCCACACTCCTGCCCCTGTCCGATTGCTGATGCCAATGCAGCAACTCCCCGATATGCCATCTCTGACCTCATTTTAAAAGGAGGCTGCCTGTGCCATGGACATGCAGACCAGTGTGTGCCCACTGGAGGCAAACACAACTCAAAAACATTTGGAAAACACGTG
Seq A exon
GTGCACGGTAAATGCTTATGCCGGCATCACACGGCTGGAGATCACTGTGAACGCTGCCATCGCCTTTACAATGACAGACCATGGAGAGCAGCTGACGGCTTAACAGGAGAAGCAAATCAGTGTGTTG
Seq C2 exon
AGTGTAAGTGTAATGGCCATGCGGAGAGCTGTCACTTTGATGAAAGCGTATGGCTGCGGTCGGGTCAGCAGCACGGTGGCGTTTGTGACTGTCTTCACAACACCACCGGCCAACACTGCCAACACTGTCAGAGCGGCTTCTACAGAGATCCGGAGAAACCCTCCACCGCCCCAGATTCCTGCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102066-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(28.0=68.2),PF0005319=Laminin_EGF=PU(37.3=28.4)
A:
PF0005319=Laminin_EGF=PD(59.7=93.0)
C2:
PF0005319=Laminin_EGF=WD(100=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAAGGAGGCTGCCTGTGC
R:
TCCGGATCTCTGTAGAAGCCG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]