RnoEX6031239 @ rn6
Exon Skipping
Gene
ENSRNOG00000005573 | Ntn4
Description
netrin 4 [Source:RGD Symbol;Acc:1565947]
Coordinates
chr7:34580862-34615008:+
Coord C1 exon
chr7:34580862-34581140
Coord A exon
chr7:34611286-34611412
Coord C2 exon
chr7:34614820-34615008
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCACTTAATGCTGTCTGTAGGTC
3' ss Score
7.83
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTTATTTTCAGAGCCCTGTCACCACCATATGACATAGAAAACCCTTACAGTGCCAAAGTACAGGAGCAGCTGAAGATCACCAACCTCCGCGTGCGGCTGCTCAAGCGACAGTCCTGCCCTTGTCAGAGAAACGACTTGAATGCAAAGCCTCACCATTTCACTCACTACGCCATCTACGACTTCATCGTCAAGGGCAGCTGCTTCTGCAACGGCCACGCTGACCAGTGTTTACCTGTGGAGGGCTTCAGACCCGTCAAGGCCCCAGGAGCGTTCCATGTG
Seq A exon
GTCCATGGGAAGTGCATGTGTAAGCACAACACGGCGGGCAGCCACTGCCAGCACTGTGCACCATTATACAACGACCGGCCCTGGGAGGCAGCGGATGGCAGAACAGGGGCTCCTAACGAATGCAGAA
Seq C2 exon
CCTGCAAGTGCAATGGGCACGCGGACACCTGTCACTTCGACATCAACGTGTGGGAGGCATCCGGGAATCGCAGCGGTGGTGTCTGCAACAACTGTCAACACAACACCGAGGGTCAGCATTGTCAGCGCTGTAAGCCGGGTTTCTACCGAGACCTCAGGAGGCCCTTCTCTGCCCCCGATGCTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005573-'4-5,'4-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(28.2=68.8),PF0005319=Laminin_EGF=PU(38.2=28.0)
A:
PF0005319=Laminin_EGF=PD(58.8=93.0)
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTCATCGTCAAGGGCAG
R:
GGTAGAAACCCGGCTTACAGC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]