BtaEX6022785 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67769820-67774608:+
Coord C1 exon
chr5:67769820-67769985
Coord A exon
chr5:67770129-67770235
Coord C2 exon
chr5:67774489-67774608
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTCTGCCTTCCAGATG
3' ss Score
12.04
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GCCAAGTACCACCTCTGCTCAGCAGGTTGGCTAGACAGTGGGCGAGTAGCCTACCCCACATCCTATGCCTCCCAGAACTGCGGCTCTGGTATCGTTGGGATAGTGGACTATGGACCAAGAAACAACAAGAGCGAGATGTGGGATGTCTTCTGCTACCGGATGAAAG
Seq A exon
ATGTGAACTGCACCTGCAAGGTGGGCTACGTGGGAGATGGCTTCTCGTGCAGTGGAAATCTGTTGCAGGTCCTAATGTCCTTCCCCTCACTCACAAACTTCCTAAAG
Seq C2 exon
GAAGTGCTGGTGTATTCCAACAGCTCAGCCAGAGGCCGGGCATTCCTGAAACACCTGACTGACCTGTCAATCCGAAGCACCCTCTTTGTGCCCCAGAACGGTGGGCTCGGGGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'69-71,'69-70,70-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(54.3=91.1),PF129472=EGF_3=PU(46.9=26.8)
A:
PF129472=EGF_3=PD(50.0=44.4)
C2:
PF0246917=Fasciclin=PU(32.2=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACCACCTCTGCTCAGCA
R:
GAGGGTGCTTCGGATTGACAG
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]