MmuEX0045200 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86848934-86850940:-
Coord C1 exon
chr10:86850778-86850940
Coord A exon
chr10:86850557-86850663
Coord C2 exon
chr10:86848934-86849053
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCTGTGCCTTTCCTTCCAGATG
3' ss Score
12.66
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCCAAGTATCACCTCTGCTCAGCTGGCTGGCTGGAGAGTGGGCGGGTTGCCTACCCCACGATCTACGCCTCTAAGAAATGTGCAAACATTGTGGGGATTGTAGACTACGGAACCAGGACCAACAAGAGTGAAATGTGGGACGTCTTCTGTTACAGAATGAAAG
Seq A exon
ATGTTAACTGCACCTGCAAGGCAGGCTACGTGGGCGATGGCTTCTCCTGCAATGGGAACCTGCTGCAAGTCCTCATGTCCTTCCCCTCACTCACGAACTTCCTGACA
Seq C2 exon
GAGGTGCTGGTTTTTTCCAGGAGCTCAGCCCAAGGCCGGGCGTTTTTGAAACACCTGACTGACCTGTCCATCAGTGGCACCCTGTTTGTGCCACAGAACAGTGGGCTACCGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(53.8=90.9),PF129472=EGF_3=PU(63.0=52.7)
A:
PF129472=EGF_3=PD(34.8=44.4)
C2:
PF0246917=Fasciclin=PU(30.4=87.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCACCTCTGCTCAGCTGG
R:
ACAAACAGGGTGCCACTGATG
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types