GgaEX1055797 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56826298-56827135:-
Coord C1 exon
chr1:56826970-56827135
Coord A exon
chr1:56826721-56826827
Coord C2 exon
chr1:56826298-56826417
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTTGTGCATTCCAGAGG
3' ss Score
8.22
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GCACGGTACCACCTGTGTGCAGCCGGCTGGCTGGATGGCCAAAGGGTGGGCTACCCTACTGCCTTCTCATCACCAAACTGCGGCGCTGGGTACGTCGGCATCGTGGACTATGGGAGAAGGGTCAACCTGAGTGAAACATGGGATGTCTTCTGCTACAGGGAAAAAG
Seq A exon
AGGTGAACTGCACCTGCAAGCCAGGCTACGTGGGGGATGGCTCTTCCTGCAGTGGGAACCTGCTGCAAGTGCTGATGTCCTTCCCCACGCTCACAAACTTCCTGGAG
Seq C2 exon
AAAATCATGGCTTACTCCAACAGCTCTCGGAAAGGGAGAGCATTCCTGCGGTACCTCACCGACCTGTCAGTGCGTGCCACACTCTTCGCTCCAAATGACAGTGGACTAAGGGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'61-63,'61-62,62-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(54.3=91.1),PF129472=EGF_3=PU(22.7=8.9)
A:
PF129472=EGF_3=PD(72.7=44.4),PF0246917=Fasciclin=PU(6.9=25.0)
C2:
PF0246917=Fasciclin=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCACCTGTGTGCAGCC
R:
ATTTGGAGCGAAGAGTGTGGC
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]