DreEX0075668 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10759895-10761239:+
Coord C1 exon
chr4:10759895-10760060
Coord A exon
chr4:10760132-10760238
Coord C2 exon
chr4:10761123-10761239
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCAGAATGTGTGTGTTTCAGATG
3' ss Score
6.94
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCAGGGTACAGCTTGTGCACAGCAGGCTGGCTTGACAAAGCAAGGGTCGCGTATCCCATGAGCTTCTCTAGCCCTAGATGTGGCTCCGGACACGTTGGTATTGTGGATTACGGGGTTCGGAATAACCTAAGTGAGACGTGGGACACATTCTGCTACAGAGTGAAAG
Seq A exon
ATGTGCAGTGTAAATGTAAAACTGGCTACATTGGTGATGGATTCTCCTGTACTGGAAACTTGATGCAGGTTCTCTCTGCAACACCGACCCTGTCTAACTTCCTGTCT
Seq C2 exon
CAAATCCTGAATTTTTCAACATCTGCATCAGGAAAAGCATTCGTGAATCGCCTTCGGAACATCACTATCCAGTCCACTCTGTTTGTACCTGATAACGATGGTCTCTATAGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'75-78,'75-77,76-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(54.3=91.1),PF129472=EGF_3=PU(39.3=19.6)
A:
PF129472=EGF_3=PD(57.1=44.4),PF0246917=Fasciclin=PU(4.7=16.7)
C2:
PF0246917=Fasciclin=FE(29.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTACAGCTTGTGCACAG
R:
AGGTACAAACAGAGTGGACTGGA
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]