RnoEX6031014 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27376716-27378420:-
Coord C1 exon
chr7:27378255-27378420
Coord A exon
chr7:27378033-27378139
Coord C2 exon
chr7:27376716-27376835
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTCCTTTCCTTCCAGATG
3' ss Score
13.2
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCCAAGTATCACCTGTGCTCGGCCGGCTGGCTGGAGAGTGGGCGGGTTGCCTACCCCACGACCTATGCCTCTCAGAAGTGTGGTGCAAACGTTGTTGGGATCGTAGACTACGGATCCAGGGCCAACAAGAGTGAAATGTGGGATGTCTTCTGTTACCGGATGAAAG
Seq A exon
ATGTGAACTGCACCTGCAAGGCAGGCTATGTGGGAGATGGCTTCTCGTGCAGTGGGAACCTGCTGCAGGTCCTCATGTCCTTCCCCTCGCTCACAAACTTCCTGACA
Seq C2 exon
GAGGTGCTGGCTTTTTCCAAGAGCTCAGCCCGAGGACAGGCATTTTTGAAACACCTGACTGACCTGTCCATCCGTGGCACCCTGTTTGTGCCACAGAACAGTGGGCTACCGGGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'83-79,'83-78,84-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(55.4=91.1),PF129472=EGF_3=PU(41.4=21.4)
A:
PF129472=EGF_3=PD(55.2=44.4),PF0246917=Fasciclin=PU(0.1=0.0)
C2:
PF0246917=Fasciclin=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGTATCACCTGTGCTCG
R:
CACGGATGGACAGGTCAGTCA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]