BtaEX6022834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67644864-67651180:+
Coord C1 exon
chr5:67644864-67644959
Coord A exon
chr5:67649590-67649715
Coord C2 exon
chr5:67650984-67651180
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCAACAATCTTCCTTTCCAGCCA
3' ss Score
8.4
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
TGTGCAGCTGTGTGCATGGAGTATGCAACAGTGGAATACACGGTGATGGGACCTGTGAGTGCTACTCTGGGTACACTGGCCGCAACTGTGATGAGC
Seq A exon
CCATCCTGGAATGTGCAGCCTTGCTCTGCCCAGAAAATTCCAGATGCTCACCTTCCAGCAAAGATGAAATCAAACTAGAATGCAAATGCCTTCCCAATTACAAAGGCGATGGCAAACACTGCGAGC
Seq C2 exon
CCATCAATCCGTGTTCACAAAATATCTGCCACCCTCATGCTCGGTGCACCTACCTGGGACCAAATCAGCACAGGTGCACGTGTCAAGAAGGCTACCGTGGGGATGGCCAGGTGTGCCTCCCGGTGGACCCCTGCCAGGTTAACTTCGGAAACTGCCCAACAGAGTCCACGGTATGCAGATACAGCGGGCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129462=EGF_MSP1_1=WD(100=90.7)
C2:
PF129472=EGF_3=WD(100=53.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGTGTGCATGGAGTAT
R:
CTGTTGGGCAGTTTCCGAAGT
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]