MmuEX6050430 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86431928-86435677:-
Coord C1 exon
chr10:86435582-86435677
Coord A exon
chr10:86432493-86432618
Coord C2 exon
chr10:86431928-86432124
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCAATAAACTTCCTGTGCAGCCA
3' ss Score
6.51
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
TGTGCAGTTGTGTCCATGGTGTGTGCAACAGCGGGATCAGTGGTGACGGAACTTGTGAGTGCTTGTCTGCGTACAGGGGGCCCAGGTGTGACAAGC
Seq A exon
CCATCCCTGAGTGTGCAGCCTTGCTCTGCCCAGAAAACTCCAGATGCTCACCTTCCAGCAAAGACGAAACCAAACTCCAGTGCAAATGCCTTCCCAGTTACAAAGGGGACGGCCAGACCTGCAAGC
Seq C2 exon
CCATCAACCCATGTTTAAAAAACGTCTGCCACCCTCACGCAAGTTGTTCCTACCTGGGACCAAATCGGCACAGTTGTGTATGCCAAAAAGGCTACCAAGGAGATGGTCAAGTGTGTCTGCCAGTGGACCCCTGCCAAACCAGCTATGGAAACTGCCCTACAAAGTCTACGGTGTGCAGATATGATGGGCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=WD(100=79.1)
C2:
PF129472=EGF_3=WD(100=53.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGGAACTTGTGAGTGCT
R:
TCCAGGCCCATCATATCTGCA
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: