MmuEX6050430 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86969183-86972932:-
Coord C1 exon
chr10:86972837-86972932
Coord A exon
chr10:86969748-86969873
Coord C2 exon
chr10:86969183-86969379
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCAATAAACTTCCTGTGCAGCCA
3' ss Score
6.51
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
TGTGCAGTTGTGTCCATGGTGTGTGCAACAGCGGGATCAGTGGTGACGGAACTTGTGAGTGCTTGTCTGCGTACAGGGGGCCCAGGTGTGACAAGC
Seq A exon
CCATCCCTGAGTGTGCAGCCTTGCTCTGCCCAGAAAACTCCAGATGCTCACCTTCCAGCAAAGACGAAACCAAACTCCAGTGCAAATGCCTTCCCAGTTACAAAGGGGACGGCCAGACCTGCAAGC
Seq C2 exon
CCATCAACCCATGTTTAAAAAACGTCTGCCACCCTCACGCAAGTTGTTCCTACCTGGGACCAAATCGGCACAGTTGTGTATGCCAAAAAGGCTACCAAGGAGATGGTCAAGTGTGTCTGCCAGTGGACCCCTGCCAAACCAGCTATGGAAACTGCCCTACAAAGTCTACGGTGTGCAGATATGATGGGCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'7-12,'7-11,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=WD(100=79.1)
C2:
PF129472=EGF_3=WD(100=53.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGGAACTTGTGAGTGCT
R:
TCCAGGCCCATCATATCTGCA
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types