GgaEX1055772 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54988998-54991644:-
Coord C1 exon
chr1:54991549-54991644
Coord A exon
chr1:54991141-54991266
Coord C2 exon
chr1:54988998-54989194
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTCACCCTCTGTCCCTCAGCAA
3' ss Score
7.39
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TTTGCAACTGTGTTCATGGAGTATGCAACAGTGGAATTACAGGAGATGGAAGATGCACTTGCTTGTCTGGATACCAAGGTCTCAGCTGTGATCAAC
Seq A exon
CAATAGCTGAATGCAAGGCCTTGCGGTGCCCTGCAAACTCAAGATGTACTACCTCAGGCAAGGATGGCAGAAGACTGCAATGCACATGTCTACCCAACTACCATGGAGATGGTACACAATGTGAAC
Seq C2 exon
CTATCAATCCATGCTTTACAAAAGTCTGCGATCCTAATGCCAACTGCACTTACCTTGGACCAAATCGTCACAAATGTACCTGTCGAGAAGGTTACAGAGGGGATGGTCAAGTCTGCTTACCTATAGACCCTTGCCAAGCACTATATGGGAATTGCCCTGCACAGTCTACCATTTGCATATATGACGGCCCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(0.1=0.0)
A:
PF129472=EGF_3=WD(100=83.7)
C2:
PF129472=EGF_3=WD(100=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGGAAGATGCACTTGCT
R:
TCCTGGGCCGTCATATATGCA
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]