DreEX6001359 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10728913-10731277:+
Coord C1 exon
chr4:10728913-10729008
Coord A exon
chr4:10729096-10729218
Coord C2 exon
chr4:10731081-10731277
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTTTTTCTTCTCAGAGC
3' ss Score
10.1
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGTGTCGTTGCAAGAATGGACTGTGTAGCAGCGGTTTGAAAGGAACAGGAGAGTGCACATGTTTTTCTGGGTACACCGGCCTAGACTGCGCCCAAG
Seq A exon
AGCTCCCAGCATGTGCTGCTTTGCAGTGTGGGCCGGATTCTCGTTGTATCGAGGAAATGTTGACAGGGCAGCTTGTGTGCAAGTGCAAACCTGGTTATCAAGGGGATGGAGTACAGTGTACAT
Seq C2 exon
CAATCAACCCGTGCTTGAGGAGTGTGTGCCATGCGAATGCAGTGTGTGCGCATACGGGACCGAACAAGCATGTCTGCACATGTACAGAAGGCTATAGTGGCGACGGTCGAGTCTGCATGCCCATTGACCCATGCCAGACTAATCTAGGCAACTGCACATCTGGCTCTACCCGCTGTGTGTATGACGGTCCTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=WD(100=85.7)
C2:
PF129472=EGF_3=WD(100=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCGGTTTGAAAGGAACA
R:
CATACACACAGCGGGTAGAGC
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]