BtaEX6023234 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75895854-75896940:-
Coord C1 exon
chr5:75896873-75896940
Coord A exon
chr5:75896137-75896321
Coord C2 exon
chr5:75895854-75895895
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTCACTTCCACCTGCCCCAGGGA
3' ss Score
6.87
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
CTCAAGGAGCTCATTGCCAGCACCCCCCTAGGTACTTACTACAACTCCAGTGCCGTCTACTCCTTTGG
Seq A exon
GGAGGGACCATTCACGTGCTTCTTCTGGTTCATCCTCCAAATCCCGGAGCACCGCCGGCCAATGCTGAGCCCCGACGTGGTGCGGGCCCTGCTGGCGGAGGAGCTGCTGTCTGCGGTCAACAGCTCGGCCCCCGCTCCCTATCGGACCGAGTATGAGGTGGACCCCGAGGGCCTGGTGATCCTGG
Seq C2 exon
AAGCCAGCGTGAAAGACATAGTTGCACTGAATTCCACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(22.2=100)
A:
PF0139015=SEA=PD(37.4=58.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGAGCTCATTGCCAGC
R:
AGCGTGGAATTCAGTGCAACT
Band lengths:
108-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]