MmuEX6054750 @ mm10
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78459430-78460507:-
Coord C1 exon
chr15:78460440-78460507
Coord A exon
chr15:78459745-78459923
Coord C2 exon
chr15:78459430-78459471
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTCTGTCTGCCTAGGGA
3' ss Score
8.85
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
CTCCAAGAACTGGTTGCCAGCACCCGCCTGGGTACTTACTACAACTCTAGTTCTGTCTACTCCTTTGG
Seq A exon
GGAGGGACCCCTCACCTGCTTCTTCTGGTTTATCCTTGACATCCCTGAGTACCAGCGACTGACCCTGAGCCCTGAAGTAGTGCGCGAGCTCCTGGTGGATGAGCTACTGTCCAACAGCTCAACCCTGGCTTCCTATAAGACCGAATATGAGGTGGACCCGGAAGGCCTGGTGATCCTGG
Seq C2 exon
AAGCCAGTGTGAACGACATAGTCGTACTGAATTCCACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.2=100)
A:
PF0139015=SEA=PD(43.1=77.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGAACTGGTTGCCA
R:
CCAGCGTGGAATTCAGTACGA
Band lengths:
110-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types