GgaEX1059437 @ galGal3
Exon Skipping
Gene
ENSGALG00000012483 | F1NDU7_CHICK
Description
NA
Coordinates
chr1:53446243-53451088:+
Coord C1 exon
chr1:53446243-53446310
Coord A exon
chr1:53447556-53447740
Coord C2 exon
chr1:53451047-53451088
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACATGATGTTTCTCTGTTAGGGA
3' ss Score
7.45
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTGAAGGATCTCATTCATTCCACAGAGCTGGGTCGATATTACAACTCAAGCACAGTGTATGCCTTCGG
Seq A exon
GGAGGGGGCTCTGACCTTCTTCTTCTGGTTTACCCTCCAAATTCCTGAGAGTCAGCAGAAGGAGATGACTGCTGAGAGGGTAAACGCAGTGCTCCACCAAGAGCTTACCACCAGCTTCAACAGCTCGGGCAGCCTGTCCTACCAGGCAGAATACAGGGTCAACCCAGACTCGCTGATTCTGCTGG
Seq C2 exon
AATCCACTGTGAAAGACATAGTAGTGCTGAAATCCACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012483-'2-4,'2-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.8=100)
A:
PF0139015=SEA=PD(42.5=71.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCTCATTCATTCCACAGAGC
R:
CCAGAGTGGATTTCAGCACTACT
Band lengths:
106-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]