RnoEX6032976 @ rn6
Exon Skipping
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119678871-119679925:-
Coord C1 exon
chr7:119679858-119679925
Coord A exon
chr7:119679159-119679337
Coord C2 exon
chr7:119678871-119678912
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTCGCTTCTGTCTGCATAGGGA
3' ss Score
9.3
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
TTCCAAGAGCTGGTTGCCAGCACCCGCTTGGGTACTTACTACAACTCCAGTTCCATCTACGCCTTTGG
Seq A exon
GGAGGGACCCCTTATCTGCTTCTTCTGGTTCATCCTTGACATCCCCGAGTACCAGCGACTGACCCTGAGCCCTGAGGTGGTGCGCGAGCTCCTGGTGGGTGAGCTACTGTCCAACAGCTCAGCCTTGGCTTCCTATAGGACCGAATATGAGGTGGACCCGGAAGGCCTGGTGATACTAG
Seq C2 exon
AAGCCAGCGTGAACGACATAGTCGTACTGAATTCCACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.8=100)
A:
PF0139015=SEA=PD(41.5=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAAGAGCTGGTTGCCA
R:
CCAGCGTGGAATTCAGTACGA
Band lengths:
110-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]