BtaEX6023243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75873199-75875414:-
Coord C1 exon
chr5:75875298-75875414
Coord A exon
chr5:75874802-75874970
Coord C2 exon
chr5:75873199-75873470
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACCCCTGCCCCTGCCCCCAGACT
3' ss Score
11.02
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGTGCCTTGTGGGACCTTCACCTTTCGGTGTGAAGACCACAGCTGTGTGAAGAAGCCCAACCCACAGTGTGACGGGCACCCCGACTGCAGGGATGGCTCGGATGAGCAGCACTGCG
Seq A exon
ACTGTGGCCTTCAGGGCCCCTTGGGCCGCATCGTGGGCGGGGCCGTGTCCTCGGAGGGTGAGTGGCCGTGGCAGGCCAGCCTCCAGGTTCGTGGCCGACACATCTGTGGGGGGGCCCTCATCGCTGATCGCTGGGTGATCACTGCTGCCCACTGCTTCCAGGAGGAAAG
Seq C2 exon
CATGGCATCCCCAGCGCTGTGGACCGTGTTCCTGGGCAAAGTGTGGCAGAGCTCACGCTGGCCGGGAGAGGTGTCCTTCAAAGTGAGCCGCCTGCTCCTGCACCCATACCACGAGGAGGACAGCCACGACTACGACGTGGCCCTGCTGCAGCTTGACCACCCTGTGGTGCGCTCGGCTACTGTGCAGCCCATCTGCCTGCCTGCCCGCTCCCACTTTTTCGAGGCGGGCCTGCACTGCTGGATCACAGGCTGGGGTGCCCTGCGAGAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152-'21-18,'21-16,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
PF0008921=Trypsin=PU(20.0=80.7)
C2:
PF0008921=Trypsin=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGGACCTTCACCTTTCG
R:
GTAGTCGTGGCTGTCCTCCTC
Band lengths:
243-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]