MmuEX0048177 @ mm10
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78442282-78444212:-
Coord C1 exon
chr15:78444096-78444212
Coord A exon
chr15:78443677-78443845
Coord C2 exon
chr15:78442282-78442553
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCACCATTATCAGACT
3' ss Score
6.04
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGTGCCCTGTGGGACATTCACTTTCCAGTGTGAGGACCGGAGCTGTGTGAAGAAGCCCAACCCAGAGTGTGACGGCCAGTCAGATTGCAGAGACGGCTCAGATGAGCAACACTGTG
Seq A exon
ACTGTGGCCTCCAGGGCCTCTCCAGCCGTATTGTGGGCGGGACCGTGTCCTCCGAGGGTGAGTGGCCATGGCAGGCCAGCCTCCAGATTCGGGGTCGACACATCTGTGGGGGGGCTCTCATCGCTGACCGCTGGGTCATAACGGCCGCCCACTGCTTCCAGGAGGACAG
Seq C2 exon
CATGGCCTCCCCGAAGCTGTGGACCGTGTTCCTGGGAAAGATGCGGCAGAACTCGCGCTGGCCAGGCGAGGTGTCCTTCAAGGTGAGCCGTCTGTTCCTGCACCCGTACCACGAGGAGGACAGCCATGACTACGACGTGGCCCTGCTGCAGCTCGACCACCCCGTGGTGTACTCGGCCACTGTGCGCCCCGTCTGCCTGCCTGCCCGCTCCCACTTCTTTGAGCCAGGCCAGCACTGCTGGATCACAGGCTGGGGAGCCCAGCGAGAGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
PF0008921=Trypsin=PU(20.0=80.7)
C2:
PF0008921=Trypsin=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGACGGCTCAGATGAG
R:
CTGGCTCAAAGAAGTGGGAGC
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types