GgaEX1059430 @ galGal3
Exon Skipping
Gene
ENSGALG00000012483 | F1NDU7_CHICK
Description
NA
Coordinates
chr1:53459253-53463122:+
Coord C1 exon
chr1:53459253-53459369
Coord A exon
chr1:53459762-53459930
Coord C2 exon
chr1:53462851-53463122
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCATGTCTTCTCCTCCACAGACT
3' ss Score
10.1
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGGTCCCCTGTAGTCCTTTCACCCACCGTTGTGATGATGGGACTTGCGTAAAGAAACCCAACCCACTGTGTGATGCCACTGTGGACTGCAAGGATCTGTCTGATGAGAAGCACTGCG
Seq A exon
ACTGCGGGCTGCAGGCCCCTCTCAGCAGGATCATTGGTGGTGCTAACTCCGTGGAAGGGGAATGGCCATGGCAAGCCAGCCTGCAAGTCCGGGGACGCCACATTTGTGGGGGAACGCTCATTGCTGACCGCTGGGTGGTCTCAGCTGCACATTGCTTCCAGGATGAGAG
Seq C2 exon
ACTGGCTTCTCCCTCTGTCTGGACCATTTACTTGGGCAAATATTTCCAAAACACCACCAGCCACACAGAGGTGTCCTTCAAAGTGATCCGCCTCTTCCTCCACCCTTACTATGAGGAGGACAGCCATGACTATGACGTGGCCCTGCTCCAGCTGGACCATCCTGTGATCATCTCACCCTTCATCCAGCCCATCTGCTTGCCTGCCACTTCCCACCTCTTTGAGCCTGGCCTTCACTGCTGGATCACTGGCTGGGGAGCCCTCAAGGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012483-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
PF0008921=Trypsin=PU(20.0=80.7)
C2:
PF0008921=Trypsin=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGTCCTTTCACCCACCGT
R:
CAGGGCCACGTCATAGTCATG
Band lengths:
254-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]