BtaEX6023513 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83864358-83877304:+
Coord C1 exon
chr5:83864358-83864550
Coord A exon
chr5:83867124-83867249
Coord C2 exon
chr5:83877129-83877304
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGTGCCTCTTTCTTACTAGGTA
3' ss Score
10.52
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
ATTGTTCGACATGACAGGACAATGGAACAAATAGTATTTCCTGTCCCCAATATATGTGAATACCTCACGCGAGAATCCAAGTGTCGCGTATTCAACACCACGGAGAGGGATGAACAGGGAAGTAAAGTGAATGACTTTTTCCAGCAAACTGAAGATCTCTACAATGAGATGAAGTGGCAGAAGAAAATCAGGA
Seq A exon
GTAATCCTGCCCTGTTCTGGTTCTCAAGGCATATTTCTCTTTGGGGGAGCATCTCCTTCAACCTGGCTGTGTTCATCAACTTAGCTGTGGCTCTCTTCTACCCATTTGGGGACGATGGAGATGAAG
Seq C2 exon
GTACTCTTTCACCGATGTTCTCAATTCTGCTTTGGATAGCAGTGGCAATCTGCACATCTATGCTGTTTTTCTTCTCCAAGCCTGTGGGTATTCGGCCATTTCTTGTGTCAGTAATGCTCAGATCAATATATACAATAGGTCTTGGGCCTACATTAATACTTCTTGGTGCAGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'61-66,'61-65,62-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACGCGAGAATCCAAGTG
R:
ACTGACACAAGAAATGGCCGA
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]