RnoEX6015611 @ rn6
Exon Skipping
Gene
ENSRNOG00000053339 | AABR07062512.1
Description
NA
Coordinates
chr4:180492978-180505916:-
Coord C1 exon
chr4:180505892-180505916
Coord A exon
chr4:180500808-180500933
Coord C2 exon
chr4:180492978-180493153
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTGTTGCTTCCTAGACA
3' ss Score
9.24
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGAAATGGCAAAAGAAGATCAGGA
Seq A exon
ACAACCCCGCCCTGTTCTGGTTCTCCAGGCACATCTCCCTGTGGGGGAGCATCTCCTTCAACCTGGCTGTGTTCATCAACCTGGCCGTGGCTCTCTTCTACCCATTCGGGGATGACGGCGATGAAG
Seq C2 exon
GTACGCTCTCCCCGCTGTTCTCAGCCCTCCTTTGGGTAGCAGTGGCGATCTGCACGTCTATGCTGTTCTTCTTCTCCAAGCCTGTGGGCATCCGGCCATTCCTTGTGTCTATCATGCTCAGATCAATATACACCATCGGTCTGGGGCCAACGCTAATACTTCTTGGTGCTGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053339-'0-4,'0-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(26.2=83.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGGCAAAAGAAGATCAGGA
R:
GCAGCACCAAGAAGTATTAGCG
Band lengths:
196-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]