MmuEX6007943 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146180180-146190648:-
Coord C1 exon
chr6:146190456-146190648
Coord A exon
chr6:146187440-146187565
Coord C2 exon
chr6:146180180-146180355
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTGTTGCTTCCTAGACA
3' ss Score
9.24
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
ATTGTGCGGCATGACCGGACTATGGAGCAGATTGTTTTCCCGGTCCCCAACATCTGTGAATTCCTCACTCGGGAATCCAAGTACCGAGTGTTCAACACAACGGAGAGGGATGAGCAAGGAAGCAAGGTGAACGACTTCTTCCAGCAAACGGAAGATCTCTACAACGAGATGAAATGGCAAAAGAAGATCAGAA
Seq A exon
ACAACCCCGCCCTGTTCTGGTTCTCCAGGCACATCTCACTCTGGGGGAGCATCTCCTTCAACCTGGCTGTGTTCATCAACCTGGCTGTGGCTCTCTTCTACCCATTCGGGGATGACGGTGATGAAG
Seq C2 exon
GCACACTCTCCCCGATGTTCTCAGTCCTCCTTTGGGTAGCAGTGGCGATCTGCACATCTATGCTGTTCTTCTTCTCCAAGCCCGTGGGCATCCGGCCATTCCTCGTGTCTGTCATGCTCAGATCGATATACACCATCGGTCTGGGGCCAACGCTAATACTACTTGGTGCTGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'85-78,'85-75,86-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGATGAGCAAGGAAGCA
R:
GTATTAGCGTTGGCCCCAGAC
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types