GgaEX1030894 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:67848539-67854559:-
Coord C1 exon
chr1:67854367-67854559
Coord A exon
chr1:67851485-67851610
Coord C2 exon
chr1:67848539-67848714
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCCCCTTTCTAGATA
3' ss Score
12.71
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
ATTGTTCGTCATGACAGAACAATGGAACAGATTGTCTTCCCTGTCCCCAATATTTGTGAATTTCTCACTCGGGAATCCAAAAGTCGGGTATTCAATACAACAGAGAGAGATGAACAAGGGAGCAAAGTCAATGACTTCTTCCAACAGACAGAAGATCTGTACAATGAGATGAAATGGCAAAAGAAAATTAGGA
Seq A exon
ATAATCCACTCCTATTTTGGTTCTCAAGACACATCTCTCTCTGGGGAAGTATTTCCTTCAACCTTGCTGTATTCATCAACTTAGCAGTTGCTCTATTCTATCCCTTTGGAGATGATGGAGATGAAG
Seq C2 exon
GCACACTTTCTCCGTTGATTTCGGTCCTCCTCTGGATAGCCGTGGCACTTTGTACAGCAATGCTGTTTTTCATCTCCAAGCCCGTTGGCATTCGACCCTTTCTGGTGTCTGTTATTCTCAGGTCTATATATACAATAGGGCTCGGTCCTACCTTGATACTTCTCGGTGCTGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'69-79,'69-78,72-79
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTCTTCCCTGTCCCCA
R:
ACGGGCTTGGAGATGAAAAACA
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]