BtaEX6023520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83804664-83809233:+
Coord C1 exon
chr5:83804664-83804847
Coord A exon
chr5:83805545-83805801
Coord C2 exon
chr5:83809033-83809233
Length
257 bp
Sequences
Splice sites
3' ss Seq
GAGTACTGCTTTATTTTCAGTAA
3' ss Score
4.9
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
TATTCCTTCTACCAGCAGTTACATGAACAAAAAAAATCAGAAAAATTCTTCAAAGTTCTCTACGACCGAATGAAGGCTGCTCAGAAAGAGATAAGATCAACAGTGACAGTTAACACCATCGACTTAGGTAACAAGAAAAGGGATGATGACACAGAACTGATGACATCTGGCCCACGGATGAGAG
Seq A exon
TAAGGGATTCATCATTACATTTAAAAGAGGGAATGAAAGGGCAGTTAACAGAAGCTTCTTCGGCCACATCCAAAGCATACTGTGTATACAGAAGAGAAATGGATCCAGAAATAGACATCATGTGTGCAGGACCTGAAGCAGGAAATGCCGAGGACAGGTCCACCGAGGAAGTCACAATGAGCCCTGCCATTGCCATCATGCAGCCGATTTTGAGGTTTCTGCAGTTACTCTGTGAGAATCATAACCGGGAGCTGCAG
Seq C2 exon
CACTTCCTGAGGAATCAAAACAACAAAACCAATTACAACCTTGTCTGTGAGACCCTTCAGTTTTTGGATTGCATTTGTGGAAGTACAACAGGAGGCCTGGGACTCTTGGGTCTCTACATCAACGAGAAGAATGTAGTGCTGGTCAACCAGACTCTGGAGAGCTTGACTGAGTATTGCCAAGGTCCATGCCATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'53-55,'53-54,54-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.279 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=33.7)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAATGAAGGCTGCTCAGAA
R:
GCATGGACCTTGGCAATACTCA
Band lengths:
308-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]