RnoEX6015645 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180546395-180550847:-
Coord C1 exon
chr4:180550664-180550847
Coord A exon
chr4:180549053-180549309
Coord C2 exon
chr4:180546395-180546490
Length
257 bp
Sequences
Splice sites
3' ss Seq
AACCACTTCTTGCCTTTCAGTGA
3' ss Score
7.83
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AATTCTTTCTACCAGCAGTTGCATGAACAAAAAAAGTCAGAGAAATTCTTCAAAGTCCTTTACGATCGGATGAAGGCTGCTCAGAAAGAGATCAGATCCACGGTGACTGTCAACACCATAGACTTAGGGAGCAAGAAGAGAGAGGAGGACAGTGACCTCATGGCCTTGGGCCCTCGGATGAGAG
Seq A exon
TGAGAGACTCATCGCTGCATTTGAAAGAGGGAATGAAAGGGCAGTTGACTGAGGCGTCTTCAGCCACGTCCAAAGCATACTGTGTGTACAGAAGGGAAATGGACCCAGACATTGACACAATGTGCCCGGGACAGGAAGCAGGAAGTGCGGAGGAAAAGTCTGCAGAGGAAGTTACCATGAGCCCAGCCATCACTATCATGCGGCCCATCCTCAGGTTCCTGCAGTTACTGTGTGAGAATCACAACCGGGAGCTTCAG
Seq C2 exon
AACTTCTTGAGGAACCAGAACAACAAAACAAACTACAACCTTGTCTGTGAAACACTTCAGTTTCTGGACTGCATCTGTGGAAGCACCACAGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'60-54,'60-53,62-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.291 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.4=33.7)
C2:
PF084546=RIH_assoc=FE(26.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTACCAGCAGTTGCATGA
R:
CCCCCTGTGGTGCTTCCA
Band lengths:
276-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]