DreEX6064847 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16068551-16074064:+
Coord C1 exon
chr18:16068551-16068731
Coord A exon
chr18:16073120-16073364
Coord C2 exon
chr18:16073702-16074064
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTGTAATATGAAGTGC
3' ss Score
2.88
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AACTCATTTCACAATCAATTGCACAAGCAGAAGAAGTCTGAGAAGTTCTTCAGGGTCTTCTATGAGCGCATGGAGCAGGCCCAGAAGGAGATCCGTTCCAGCGTCTCTGTCAACATGTTTGAGCTCAGCTGCAGGAAGAGGGAGGAGGAGAGCGAGGGCTCCGGGATCAGACATAAGAAAG
Seq A exon
TGCGAGACTCCTTGCACCTCAGAGAAGAGATGCGGGGTCAGCTTAAAGACGCCTCCTCTGTGACCTCCAAAGCCTACAGCACCTTTCGCCGGGAATGGGACCCTGACATTGAAGCAGTGGGAACAACAGGAGATGCGACAGAGGAAGTGGTCGAGGAAATCCAAATGAGCCAGGCCATCACCATCATGAAGCCCATCTTACGCTTCCTTCAGCTGCTCTGTGAAAATCACAACAGAGACCTTCAG
Seq C2 exon
AACTTTCTGCGAGATCAGAACAACAAAACCAATTATAACCTGGTGTGTGAGACGCTGCAGTTTCTCGACTGTATCTGCGGCAGTACAACGGGTGGCCTGGGTCTGCTGGGGCTCTACATTAATGAGAGGAACGTGTACCTGGTCATACAGACACTAGAGACCATCACAGAGTACTGCCAGGGTCCTTGCCATGAAAATCAGGTATTGATGCACCATATTTGTTGGAAAACAGGATCAAATGTCCTTTTGTATGGAAAAGTAAGTGCAAATGTTGGGTGCTTTCACTCCTAGACTTTTGTTTTGGAACCTGTCTCGTTTGCCCAGTTAGCGCGGTTCGTTTGGCATATGTGAATCCAGCAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'46-48,'46-47,47-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.018 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(29.9=35.4)
C2:
PF084546=RIH_assoc=PD(72.8=85.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGGAGATCCGTTCCA
R:
TTTTCATGGCAAGGACCCTGG
Band lengths:
299-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]