GgaEX6002996 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:67884029-67886145:-
Coord C1 exon
chr1:67885962-67886145
Coord A exon
chr1:67885133-67885389
Coord C2 exon
chr1:67884029-67884229
Length
257 bp
Sequences
Splice sites
3' ss Seq
AAGGAAAATTATCTTTTCAGTGA
3' ss Score
3.26
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TATTCAACTTACCAGCAACTGAAGGAGCAAAAAAAGTCAGAAAAATTCTTTAAAGTCCTGTATGACCGTATGAAGGCTGCTCAGCAAGAGATACGGTCAACAGTGACAGTGAACACTATTGATTTGGGGAGCAAAAAGAAAGATGATGATAGTGACCTAACCATATCTGTACCCAAAAAGAGAG
Seq A exon
TGAAGGATTCAACACTGCACCTGAAAGAGGGTATGAAAGTTCAGTTAACAGAAGCATCTTCTGCAACATCCAAGGCTTACTCTGTATATAGAAGAGAAATGGACCCAGAAATAGATCTTATGGGCTCAGGAACAGATGCTGCAAACGCAGAGGAGAAGTCCACAGAAGAAGCAGTAATGAGTCCTGCTATTGCAATCATGCAGCCAATACTGAGATTTCTCCAGCTGCTATGCGAGAACCACAACCGAGAGCTCCAG
Seq C2 exon
AACTTTTTAAGACATCAGAACAATAAAACAAATTACAACCTTGTTTGTGAGACACTTCAGTTTTTGGACTGTATCTGTGGAAGCACGACAGGTGGACTAGGCTTACTGGGGCTTTACATCAATGAGAGGAACGTAGCTCTCGTGAACCAGACATTGGAAAGCTTGACTGAGTATTGCCAAGGTCCATGCCATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'57-68,'57-66,58-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.198 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=33.7)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACCAGCAACTGAAGGAGC
R:
AAGCCCCAGTAAGCCTAGTCC
Band lengths:
292-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]