MmuEX6007936 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146229693-146234061:-
Coord C1 exon
chr6:146233878-146234061
Coord A exon
chr6:146232294-146232550
Coord C2 exon
chr6:146229693-146229893
Length
257 bp
Sequences
Splice sites
3' ss Seq
AATCACTGCTTGCCTTTCAGTGA
3' ss Score
7.63
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
TATTCTTTCTACCAGCAGTTGCATGAACAAAAAAAGTCAGAGAAATTTTTCAAAGTCCTTTATGATCGGATGAAGGCTGCTCAGAAAGAGATCAGATCCACGGTGACCGTCAACACCATAGACTTAGGGAGCAAGAAGAGAGAAGAGGACAGTGACGTCATGGCCCTGGGCCCTCGGATGAGAG
Seq A exon
TGAGAGACTCATCACTACATTTGAGAGAAGGAATGAAAGGGCAGTTAACAGAAGCGTCTTCAGCCACATCCAAAGCATACTGTGTGTACAGAAGAGAGATGGACCCGGAAATAGACACAATGTGCCCGGGACAGGAAGCAGGAAGTGCGGAGGAAAAGTCTGCGGAGGAAGTTACCATGAGCCCGGCCATCACCATCATGCGTCCCATCCTCAGGTTCCTGCAGTTACTGTGTGAGAATCATAACCGGGAGCTTCAG
Seq C2 exon
AACTTCTTGAGGAACCAGAACAACAAAACAAACTACAACCTTGTCTGTGAAACGCTTCAGTTCCTGGACTGTATCTGCGGAAGTACCACAGGGGGTCTAGGCCTGCTGGGGCTCTACATCAATGAGAGGAATGTAGCTCTGGTCAACCAGACTCTGGAGAGCTTGACCGAGTACTGCCAAGGCCCGTGCCACGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'68-63,'68-61,70-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.291 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=33.7)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGGATGAAGGCTGCTCAG
R:
CTCGGTCAAGCTCTCCAGAGT
Band lengths:
292-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types