DreEX0040311 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39976097-39978379:+
Coord C1 exon
chr6:39976097-39976280
Coord A exon
chr6:39976884-39977137
Coord C2 exon
chr6:39978179-39978379
Length
254 bp
Sequences
Splice sites
3' ss Seq
AACAAGACACTGATCTCCAGGTA
3' ss Score
1.87
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CATTCCTTCTTCAAACGTTTAACAGAAGACAAAAATTCAGAGAAGTTTTTCAGGGTGTTTTATGACAGAATGAAAGTGGCTCAGGTGGAGATCAAAGCCACGGTTACTGTCAACACTAGTGACCTCGGCAACAAGCGGCGTGACGACAACACTCCAGACAAAGATACTCCACAACGCCGCAGAG
Seq A exon
GTAAAGACTCCGGTGTGGTGGTGACAGATGATGCTCGTGAGCAGCTGTTGGAGGCTTCAGCTGCGACTAAGAAGGCCTTTGGTTCATATCGTCGAGATGCTGATCCCGAGGAGACGTTTGGCACGGCTGATGGAGATAAAGGAGGTGGAGATAAAGGCACAGAGCAGGGCGAGATGAGCCCTGTCATCCTCATAATGCAGCCAATCCTGCGCTTCCTGCAGCTGCTGTGCGAAAACCACAATCGAGACCTGCAG
Seq C2 exon
AATTTTCTGCGCTGTCAGAACAATAAAAACAACTATAATCTGGTGTGTGAGACGCTGCAGTTCCTGGACTGTATCTGTGGCAGCACAACAGGAGGCCTGGGGCTGTTAGGACTCTACATCAACCAGCATAACGTAGCGCTCATTAATCAGACTGTAGAGAGCCTCACTGAATACTGTCAAGGTCCCTGCCATGACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'45-54,'45-52,46-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.376 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084546=RIH_assoc=PU(24.2=34.1)
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGATCAAAGCCACGGTT
R:
CTGATTGTCATGGCAGGGACC
Band lengths:
301-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]