BtaEX6023522 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83797997-83804847:+
Coord C1 exon
chr5:83797997-83798105
Coord A exon
chr5:83798791-83798978
Coord C2 exon
chr5:83804664-83804847
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTCCTAATCACAGGAA
3' ss Score
7.57
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GGTAATACATTAAGAAAAATCCTCCTGAATCGATACTTTAAAGGTGATTACGGAGTCTCTATAAATGGACACCTCTCTGGAACCTACTGCAAAACTGCACAAGGAGGAG
Seq A exon
GAAGCTTTTCTGGGCAAGATTCAGATAAGATGGGGATATCCATGTCAGATATTCAGTGTCTCCTGGATAAAGAAGGTGCATCTGAACTTGTCATCGATGTTATAGTGAATACCAAAAATGACAGAATTTTTTCAGAAGGCATCTTACTTGGCATTGCCTTGCTGGAAGGAGGAAACACACAAACTCAG
Seq C2 exon
TATTCCTTCTACCAGCAGTTACATGAACAAAAAAAATCAGAAAAATTCTTCAAAGTTCTCTACGACCGAATGAAGGCTGCTCAGAAAGAGATAAGATCAACAGTGACAGTTAACACCATCGACTTAGGTAACAAGAAAAGGGATGATGACACAGAACTGATGACATCTGGCCCACGGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'51-52,'51-51,52-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGTCTCTATAAATGGACACCT
R:
CTCTCATCCGTGGGCCAGAT
Band lengths:
244-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]