MmuEX6007934 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146233878-146241245:-
Coord C1 exon
chr6:146241137-146241245
Coord A exon
chr6:146240272-146240459
Coord C2 exon
chr6:146233878-146234061
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCCCTGACCATAGGAA
3' ss Score
9.49
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGTAGCACATTACGGCGAATCCTCCTGAATCGGTACTTCAAGGGTGATCATAGCATTAGTGTGAACGGACCTCTGTCAGGAGCCTATGCCAAGACAGCACAAGTGGGAG
Seq A exon
GAAGCTTCTCTGGACAGGATTCAGATAAGAAGGGCATTTCAATGTCCGATATCCAGTGTTTGCTGGACAAAGAAGGAGCATCCGAACTTGTCATCGATGTCATTGTGAACACCAAAAACGACAGGATCTTTTCCGAAGGAATTTTGCTTGGCATTGCCTTGCTGGAAGGAGGAAACACACAGACCCAG
Seq C2 exon
TATTCTTTCTACCAGCAGTTGCATGAACAAAAAAAGTCAGAGAAATTTTTCAAAGTCCTTTATGATCGGATGAAGGCTGCTCAGAAAGAGATCAGATCCACGGTGACCGTCAACACCATAGACTTAGGGAGCAAGAAGAGAGAAGAGGACAGTGACGTCATGGCCCTGGGCCCTCGGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'66-59,'66-58,67-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATTACGGCGAATCCTC
R:
TCCTCTTCTCTCTTCTTGCTCCC
Band lengths:
255-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types