RnoEX6015644 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180550664-180555715:-
Coord C1 exon
chr4:180555607-180555715
Coord A exon
chr4:180555000-180555187
Coord C2 exon
chr4:180550664-180550847
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTCCCCGACCACAGGGG
3' ss Score
7.63
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGTAGCACATTACGGAAAATCCTCCTGAATCGGTACTTCAAGGGTGACCACAGCGTTGGTGTGAACGGACCTCTGTCAGGAGCCTACGCCAAGACAGCACAAGTGGGAG
Seq A exon
GGGGCTTCACTGGACAGGATGCCGATAAGACGGGGATTTCCATGTCCGATATCCAGTGTTTGCTGGACAAGGAAGGGGCCTCCGAACTTGTCATCGATGTCATTGTGAACACCAAAAACGACAGGATCTTTTCCGAGGGCATCTTGCTTGGCATTGCCCTGCTGGAAGGAGGAAACACACAAACCCAG
Seq C2 exon
AATTCTTTCTACCAGCAGTTGCATGAACAAAAAAAGTCAGAGAAATTCTTCAAAGTCCTTTACGATCGGATGAAGGCTGCTCAGAAAGAGATCAGATCCACGGTGACTGTCAACACCATAGACTTAGGGAGCAAGAAGAGAGAGGAGGACAGTGACCTCATGGCCTTGGGCCCTCGGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'58-51,'58-50,59-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAATCGGTACTTCAAGGGTG
R:
CAAGGCCATGAGGTCACTGTC
Band lengths:
254-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]