DreEX6064848 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16064643-16068731:+
Coord C1 exon
chr18:16064643-16064736
Coord A exon
chr18:16064834-16065021
Coord C2 exon
chr18:16068551-16068731
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTATCTGTATGTGTGTATAGGTG
3' ss Score
8.26
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGCAATGCACTGAGGAAGAGTCTCCTTGCTCACTACTTCGGGAACCACACCAAAGCCCTGGAGTACAGCAGCAGCAACAGCTCATCATCTGGAG
Seq A exon
GTGGCTCTCCAGGACAGGACTCTGATAAACCAGGCACAAGCTTAGCAGATATCCAGTGTGTGCTGGACAATGTCGGAGCTTCCGAGCTGGTCGTCGACCTCATAGTCAGCACTAAAAATGACCGGATCTTTGAGGAGAGCATTTTACTGGGCATCGCACTGCTGAGAGGAGGGAATACACAAATTCAG
Seq C2 exon
AACTCATTTCACAATCAATTGCACAAGCAGAAGAAGTCTGAGAAGTTCTTCAGGGTCTTCTATGAGCGCATGGAGCAGGCCCAGAAGGAGATCCGTTCCAGCGTCTCTGTCAACATGTTTGAGCTCAGCTGCAGGAAGAGGGAGGAGGAGAGCGAGGGCTCCGGGATCAGACATAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.183 C2=0.230
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGCTCACTACTTCGGGA
R:
TTATGTCTGATCCCGGAGCCC
Band lengths:
248-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]