GgaEX1030902 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69895968-69899336:-
Coord C1 exon
chr1:69899228-69899336
Coord A exon
chr1:69897466-69897653
Coord C2 exon
chr1:69895968-69896151
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGTATTTCTCTGACTTGCAGGTG
3' ss Score
10.72
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGCAACACTTTAAGGAAAATACTCCTGTACCGCTACTTTAAAGGAGAATATGGAAGTGGTATGAATGGGCCTCTGTCTGCCAGCTACAGCAAAACTGCACAAGTGGGAG
Seq A exon
GTGGATTTGTAGGACAAGACTCAGATAAGTCTGGAGTATCCATGTTTGATATTCAGTGCCTTCTGGATAAAGAAGGTGCATCAGAACTTGTCATAGACGTTATAGTCAGCACCAAAAATGACAGAATTTTCTCAGAAGGCATTTTGCTTGGTATTGCGTTGCTTGAAGGTGGAAATGCACAAACACAG
Seq C2 exon
TATTCAACTTACCAGCAACTGAAGGAGCAAAAAAAGTCAGAAAAATTCTTTAAAGTCCTGTATGACCGTATGAAGGCTGCTCAGCAAGAGATACGGTCAACAGTGACAGTGAACACTATTGATTTGGGGAGCAAAAAGAAAGATGATGATAGTGACCTAACCATATCTGTACCCAAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'43-49,'43-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAATACTCCTGTACCGCT
R:
TCATCTTTCTTTTTGCTCCCCA
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]