BtaEX6023538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83597493-83630925:+
Coord C1 exon
chr5:83597493-83597637
Coord A exon
chr5:83599422-83599572
Coord C2 exon
chr5:83630732-83630925
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTTCTAAATTAGGTG
3' ss Score
9.93
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATATGATTCTATAACAGACTCTTCCAGAAATGATATGAAGAGGAAATTTGCACTGACAATGGAATTTGTTGAAGAATACTTGAAAGAAGTTGTAAATCAGCCTTTTCCTTTTGGAGATAAAGAAAAAAACAAACTGACATTTGAG
Seq A exon
GTGGTTCACTTGGCTCGGAATCTTATATACTTTGGATTTTACAGTTTCAGTGAATTGTTACGGCTAACAAGGACTCTTCTGGCTATCTTAGATATTGTCCAGGCCCCCATGTCATCGTATTTTGAAAGATTAAGCAAATTTCAAGATGGAG
Seq C2 exon
GAAACAATGTCATGAGAACCATCCATGGGGTGGGAGAGATGATGACCCAGATGGTGCTCAGCAGAGGCTCTATCTTCCCCATGAGTGTGCCTGACATTCAGCCCAGCCTGCACCCCAGCAAGCAGGGGAGCCCCACTGACCACGAGGACGTCACCGTCATGGACACCAAGCTGAAGATCATTGAGATTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'20-23,'20-21,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAAGAAGTTGTAAATCAGCCT
R:
TTCAGCTTGGTGTCCATGACG
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]