DmeEX6018567 @ dm6
Exon Skipping
Gene
FBgn0010051 | Itp-r83A
Description
The gene Inositol 1,4,5,-trisphosphate receptor is referred to in FlyBase by the symbol DmelItpr (CG1063, FBgn0010051). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:5517117..5539411. Its molecular function is described by: calcium ion binding; phosphatidylinositol binding; inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity; inositol 1,4,5 trisphosphate binding. It is involved in the biological process described with 22 unique terms, many of which group under: behavior; response to nutrient levels; response to starvation; sensory perception; regulation of feeding behavior. 52 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; alimentary canal; cellular anatomical entity; developing material anatomical entity; organelle. The phenotypic classes of alleles include: phenotype; increased mortality; size defective; body size defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-18 embryonic stages.
Coordinates
chr3R:5530988-5532306:+
Coord C1 exon
chr3R:5530988-5531141
Coord A exon
chr3R:5531202-5531343
Coord C2 exon
chr3R:5531660-5532306
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCATTGAACTGTCGTTCCAGGTG
3' ss Score
8.81
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTACGATGGCAAGAACCAGCAGCCAGATCAAAACAAGCAAGCCTGCCGCGCCAAGTTCAATACAACCATCGCCTTTGTGGAGAACTATCTGTGCAATGTAGCCACCAAAGTGTGGCTCTTCACGGATCAAGAACAAAACAAACTCACCTTCGAG
Seq A exon
GTGGTTAAACTCGCAAGGGACCTGATTTATTTCGGATTCTACAGCTTTAGCGATCTTCTAAGACTTACGAAGACGCTTCTGTCCATCCTGGACTGCGTGTCCGATACTTCATCAGGTGAATTTGCCAGCACGGATATTGATT
Seq C2 exon
CCGAAGGTGGAGTTCTACGCTCGATTGGGGACATAAATACAGTAATGACATCTTTGGCCCTGGGATCAGTGGGCCAGGCTATAGCTGCGCCCACGATCTCCCTGCAGCAGCGGAAGTCCGTCTCCCAACTAATGAAGGAGTATCCCTTGGTGATGGACACGAAACTGAAAATAATCGAGATACTGCAGTTCATTTTGGACGTTCGTCTGGACTATAGGATCAGCTGTCTGCTCTCCATATTCAAGCGGGAGTTCGACGAGTCCGAGGTGGCCGCTTCGGCCGCTAGCAATGAGGCAAGTCAGCAGCAGTCGCAACAACAGGAACCGCAGACGCCTGGCAGCTCCAATGAGACTGATCCCCTCGACAGTGCCGAGTCTGTGGCCGCCGGCGCTGCCGCAGCCGCCGCTACCACTGCGCGGCAGAAGAACATCGACCTGGAGTCCATCGGCGTGCAGGCGGAGGGAATCTTCGACTGCGAGCGGAGCGACGCAGCTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0010051-'16-12,'16-10,17-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.013 C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0078335

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0078336, FBpp0310670
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCATCGCCTTTGTGGAG
R:
TCGTGTCCATCACCAAGGGAT
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)