BtaEX6093948 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21787307-21790275:-
Coord C1 exon
chr22:21790134-21790275
Coord A exon
chr22:21789418-21789571
Coord C2 exon
chr22:21787307-21787494
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTAAATACAATAGGTT
3' ss Score
6.55
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTACGATAGTAGTGGAACCTCCAAAGATGAAATTAAGGAGAGGTTCGCTCAGACCATGGAATTTGTGGAGGAATATTTAAGAGATGTGGTGTGTCAGAGGTTCCCTTTCTCTGATAAGGAGAAAAATAAGCTTACATTTGAG
Seq A exon
GTTGTCAACCTAGCTAGGAATCTCATCTACTTTGGTTTCTACAACTTCTCCGACCTTCTCCGATTAACCAAAATCCTCCTGGCCATATTGGACTGTGTGCACGTGACCACAATCTTCCCCATCAGCAAGATGGCGAAGGGAGAGGAGAATAAAG
Seq C2 exon
GCAGTAACGTGATGCGGTCCATCCATGGGGTCGGAGAGCTGATGACCCAGGTGGTGCTCCGGGGAGGAGGCTTCCTGCCCATGACACCCACGGCCACCGCCCCTGAGGGCAACGTGAAGCAGGCCGAGCCGGAGAAGGAGGACATCATGGTGATGGACACCAAGCTGAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCGCTCAGACCATGGAA
R:
ATGATGTCCTCCTTCTCCGGC
Band lengths:
250-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]