GgaEX1030855 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18443668-18445376:+
Coord C1 exon
chr12:18443668-18443809
Coord A exon
chr12:18444723-18444876
Coord C2 exon
chr12:18445189-18445376
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCTTATTGTTATTTTGGTAGGTG
3' ss Score
7.17
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTATGATAGCAGCGGAACTTCCAAAGATGAAATTAAAGAGAGATTTGCGCAAACGATGGAGTTTGTAGAGGAGTATTTAAGAGATGTGGTGTGTCAGAGATTCCCTTTCTCTGATAAAGAGAAGAATAAGCTCACTTTTGAG
Seq A exon
GTGGTTAACTTAGCCAGAAATCTGATATATTTTGGTTTCTACAACTTCTGTGACCTCCTCAGGCTGACCAAAATCCTCCTTGCTATATTAGACTGTGTGCACATCACTACCATCTTCCCTATTACCAAAATGGCAAAAGGCGAGGAAAGCAAAG
Seq C2 exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'27-33,'27-31,29-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGGAACTTCCAAAGATG
R:
GTCTGCTTGACATTGCCCTCA
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]