RnoEX6014538 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140420602-140422751:+
Coord C1 exon
chr4:140420602-140420743
Coord A exon
chr4:140421413-140421566
Coord C2 exon
chr4:140422564-140422751
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTAAATGTAATAGGTT
3' ss Score
6.64
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTATGACAGCAGTGGAGCATCGAAGGATGAAATCAAGGAGAGGTTTGCTCAGACGATGGAGTTTGTGGAGGAGTACCTGAGAGATGTGGTTTGTCAAAGATTCCCCTTTTCTGATAAGGAGAAAAATAAGCTCACATTTGAG
Seq A exon
GTTGTGAACTTAGCCAGGAACCTCATATACTTTGGCTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTTCATGTGACAACCATCTTCCCCATTAGCAAGATGACGAAAGGCGAAGAGAATAAAG
Seq C2 exon
GCAGCAACGTGATGAGATCTATCCATGGAGTTGGGGAGCTCATGACCCAGGTGGTGCTTCGGGGAGGAGGCTTTTTGCCCATGACTCCTATGGCTGCTGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGATATCATGGTCATGGACACCAAGTTAAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'38-36,'38-35,39-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAGTGGAGCATCGAAG
R:
CATTTCCTTCAGGGGCAGCAG
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]