DreEX6092748 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35672674-35674905:-
Coord C1 exon
chr11:35674764-35674905
Coord A exon
chr11:35673039-35673192
Coord C2 exon
chr11:35672674-35672864
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTGTGTTTCTTAGGTT
3' ss Score
10.53
5' ss Seq
AAAGTAAAT
5' ss Score
4.06
Exon sequences
Seq C1 exon
TTATGACAATGACGGAACCAGCAGAGATGAGATAAAGGAGCGTTTTGCGCTGACAATGGATTTTGTGGAGAACTACCTCAGAGATGTGGTCCTTCAAAATGTTCCTTTCTCCGATAAAGAGAAAAACAAGCTCACTTTTGAG
Seq A exon
GTTGTGAATTTAGCAAGAAACCTCATTTACTTCGGCTTTTACAACTTCAGCGACTTGTTACGTTTGACGAAGATCCTTTTGGCCATTTTGGACTGCGTTCATGTCAGCACCATTTATCCCATCAACAAGATGGAAAAAGGAGATGAGTCCAAAA
Seq C2 exon
GTAGTAATGTAATGAAGTCCATTCATGGTGTTGGTGAGCTGATGACTCAGGTGGTGCTGAGAGGAGGCGGATTCTTACCCACAACCCCTACAACACCTCCAGATGGAGATGTAGTGAAGACCCAGACAGAACCAGAGAAAGAAGACATTCTGGTGATGGATACCAAGCTAAAAATCATAGAGATATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAATGACGGAACCAGCAG
R:
TCTGGAGGTGTTGTAGGGGTT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]