MmuEX6006014 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108337358-108339548:+
Coord C1 exon
chr6:108337358-108337499
Coord A exon
chr6:108338179-108338332
Coord C2 exon
chr6:108339361-108339548
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTAAATGCAATAGGTT
3' ss Score
5.83
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTATGACAGCAGTGGAACATCCAAAGATGAAATTAAGGAGAGGTTTGCACAGACGATGGAGTTTGTGGAGGAGTACCTAAGAGATGTGGTTTGTCAAAGATTCCCCTTCTCTGATAAGGAGAAAAATAAGCTCACGTTTGAG
Seq A exon
GTTGTGAACTTAGCCAGGAATCTCATATACTTTGGTTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTCCATGTGACCACTATCTTCCCCATTAGCAAGATGACAAAAGGAGAAGAGAATAAAG
Seq C2 exon
GCAGTAACGTGATGAGGTCTATCCATGGCGTTGGGGAGCTGATGACCCAGGTGGTGCTGCGGGGAGGAGGCTTCTTGCCCATGACTCCCATGGCTGCGGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGACATCATGGTCATGGACACCAAGTTGAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGCACAGACGATGGAGT
R:
GTCCTCTTTCTCTGGCTCTGC
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: