MmuEX0024747 @ mm10
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27098314-27099799:+
Coord C1 exon
chr17:27098314-27098458
Coord A exon
chr17:27098974-27099115
Coord C2 exon
chr17:27099600-27099799
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGGGCCCACCCCCTTTGCAGGTG
3' ss Score
10.21
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CTATGATTCCAATCTCAACGCGTCGAGAGATGACAAAAAAAACAAGTTTGCCAGCACCATGGAGTTCGTAGAAGATTACCTCAACAACGTGGTCAGCGAGGCCGTGCCCTTTGCCAACGACGAGAAGAACATACTCACCTTTGAG
Seq A exon
GTGGTGAGCCTGGCGCACAATCTCATCTACTTCGGGTTCTACAGCTTCAGCGAGCTGCTGAGGCTCACACGCACGCTACTGGGCATCATAGACTGCATCCAGGCACCGGCAGCCATGCTGCAGGCCTATGAGGAGCCTGGTG
Seq C2 exon
GCAAGAATGTGCGGAGGTCCATCCAGGGGGTGGGGCACATGATGTCCACCATGGTGCTGAGCCGCAAGCAGTCTGTATTTGGTGCCTCCAGCCTGCCTGCTGGAGTGGGTGTCCCTGAGCAGCTAGACAGAAGCAAATTTGAGGACAATGAGCACACTGTGGTGATGGAGACCAAACTGAAGATCCTGGAGATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'38-30,'38-29,39-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACCATGGAGTTCGTAG
R:
ACCACAGTGTGCTCATTGTCC
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types