GgaEX7010840 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4578610-4579560:-
Coord C1 exon
chr26:4579416-4579560
Coord A exon
chr26:4579104-4579251
Coord C2 exon
chr26:4578610-4578806
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTTGCCTTGTCCTTCCCCAGGTC
3' ss Score
10.53
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTACGACTCCAACCTCAACGCCTCGCGTGACGACAAGAAAAACAAGTTTGCCAGCACCATGGAGTTTGTGGAGGACTACCTCAACAACGTGGTGAGCGAAGCGGTGCCCTTTGCCAACGAGGAGAAGAACAAGCTCACCTTCGAG
Seq A exon
GTCGTCAGCCTTGCCCACAACCTCATCTACTTTGGCTTCTACAGCTTCAGTGAGCTGCTGCGCCTGACACGCACACTGCTGGGCATCATCGACTGCGTCCAAAACCCCCAGCTGATGATGCAGGCGGTCTACAGTGATGAGGTGACAG
Seq C2 exon
GGAAGAATGTGAGGAGGTCAATCCAGGGCGTTGGACAGATGATGTCCACGATGGTGCTGAGCAGGAAACAGTCTATCTTCAGCCCTCCGAGCCTCAGTGCTGGCTCTGCCCCAGAGCCCGTGGACAGAGGGAGGAGCGTCGAAAATGAGAACATTGTGGTGATGGAGACCAAGCTGAAGATCCTGGAGATCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'20-25,'20-23,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCAGCACCATGGAGTTT
R:
CATTTTCGACGCTCCTCCCTC
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]